Database of Structural Repeats in Proteins

Protein prenyltransferase beta subunit - PFTB


Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, CAAX; and GGTase-II prenylates both cysteines in the CC (or CXC) terminal sequence.

Number of PDB chains with PFTB repeat: 152


1 - 50

PDB

Chain

UniProt

Name

Organism

Repeat annotation

Copies

Score

6BZX
A
-
-
-
10-41, 42-74, 75-105, 106-136, 137-167, 168-198, 199-231
7
0.78
5CQS
D
Q06706
Elongator complex protein 1
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
975-1005, 1006-1053, 1069-1108
3
0.79
4YDO
B
-
-
-
271-308, 341-389, 402-450, 466-514
4
0.82
4YDE
B
-
-
-
271-308, 341-389, 402-450, 466-514
4
0.82
4MBG
B
Q4WPS9
Protein farnesyltransferase subunit beta {ECO:0000256|RuleBase:RU365056}
Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
170-215, 224-265, 285-326, 338-384
4
0.92
4LNG
B
Q4WPS9
Protein farnesyltransferase subunit beta {ECO:0000256|RuleBase:RU365056}
Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
170-215, 222-264, 285-326, 338-384
4
0.90
4LNB
B
Q4WPS9
Protein farnesyltransferase subunit beta {ECO:0000256|RuleBase:RU365056}
Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
192-237, 244-286, 307-348, 360-406
4
0.90
4L9P
B
Q4WPS9
Protein farnesyltransferase subunit beta {ECO:0000256|RuleBase:RU365056}
Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
170-215, 224-265, 285-326, 338-384
4
0.93
4GTV
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
116-157, 164-205, 212-252
3
0.89
4GTT
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
116-157, 164-205, 212-254
3
0.92
4GTS
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
68-109, 116-157, 163-204, 212-253, 260-303
5
0.90
4GTR
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 222-263, 270-305
3
0.94
4GTQ
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 222-263, 270-317
3
0.94
4GTP
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 222-263, 270-305
3
0.94
4GTO
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 221-262, 270-318
3
0.92
4GTM
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 222-263, 270-318
3
0.94
4EHM
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
67-108, 115-156, 164-205, 212-254
4
0.90
3PZ4
B
Q8K2I1
Protein farnesyltransferase subunit beta
Mus musculus (Mouse)
174-215, 221-262, 270-317
3
0.92
3PZ3
B
P53612
Geranylgeranyl transferase type-2 subunit beta
Mus musculus (Mouse)
116-157, 164-205, 212-254
3
0.92
3PZ2
B
P53612
Geranylgeranyl transferase type-2 subunit beta
Mus musculus (Mouse)
68-109, 116-157, 164-205, 211-252, 260-303
5
0.89
3PZ1
B
P53612
Geranylgeranyl transferase type-2 subunit beta
Mus musculus (Mouse)
116-157, 164-205, 211-252
3
0.93
3KSQ
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 221-262, 270-318
3
0.93
3KSL
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 222-263, 270-318
3
0.94
3HXF
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
116-157, 164-205, 211-252
3
0.90
3HXE
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
116-157, 164-205, 211-252
3
0.93
3HXD
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
67-115, 116-163, 164-211, 212-258, 260-308
5
0.90
3HXC
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
67-115, 116-163, 164-211, 212-252, 260-308
5
0.85
3HXB
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
67-115, 116-163, 164-211, 212-259
4
0.92
3FTI
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
120-170, 173-221, 222-269, 270-318, 332-380
5
0.88
3EUV
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 221-262, 270-317, 332-374
4
0.91
3EU5
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
120-165, 174-215, 221-262, 270-305
4
0.92
3E37
B
P49356
Protein farnesyltransferase subunit beta
Homo sapiens (Human)
176-217, 223-264, 272-320
3
0.92
3E34
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 221-262, 270-305
3
0.93
3E33
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 221-262, 270-305
3
0.92
3E32
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 222-263, 270-305, 332-374
4
0.92
3E30
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 222-263, 270-305, 332-374
4
0.93
3DSX
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
116-157, 164-205, 212-252, 260-303
4
0.88
3DSW
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
116-157, 164-205, 211-252, 260-303
4
0.89
3DSV
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
116-157, 164-205, 212-254, 260-303
4
0.91
3DSU
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
163-205, 211-253, 260-302
3
0.90
3DST
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
116-157, 164-205, 211-252, 260-303
4
0.89
3DSS
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
67-115, 116-163, 164-211, 212-259, 260-308
5
0.91
3DPY
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 221-262, 270-305, 332-374
4
0.90
3C72
B
Q08603
Geranylgeranyl transferase type-2 subunit beta
Rattus norvegicus (Rat)
114-156, 163-205, 211-253, 259-301
4
0.88
2ZIS
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 222-263, 270-305
3
0.94
2ZIR
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 222-263, 270-305, 332-374
4
0.91
2R2L
B
Q02293
Protein farnesyltransferase subunit beta
Rattus norvegicus (Rat)
174-215, 221-262, 270-305
3
0.92
2IEJ
B
P49356
Protein farnesyltransferase subunit beta
Homo sapiens (Human)
674-715, 721-762, 770-805
3
0.92
2H6I
B
P49356
Protein farnesyltransferase subunit beta
Homo sapiens (Human)
674-715, 722-763, 770-805, 832-874
4
0.92
2H6H
B
P49356
Protein farnesyltransferase subunit beta
Homo sapiens (Human)
674-715, 721-762, 770-818
3
0.92