Database of Structural Repeats in Proteins



Parallel beta-helix repeat - PbH1


The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.

Link to other db

InterPro:

IPR006626

SMART:

SM00710

Number of PDB chains with PbH1 repeat: 114
1 - 50

PDB

Chain

UniProt

Name

Organism

Repeat annotation

Copies

Score
2V5I
A
-
-
-
185-205, 206-227, 311-332, 333-355, 361-383, 389-411, 421-443, 468-491
8
0.93
1QRC
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-161, 162-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.93
1CLW
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-161, 162-184, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
2VFM
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-160, 161-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
2VFN
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-160, 161-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
2VFO
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-160, 161-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
2VFP
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-160, 161-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
2VFQ
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-160, 161-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
2XC1
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-160, 161-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
6F7K
G
A0A0C5PVE3
Salmonella phage Det7
316-336, 428-450, 487-509, 516-537, 548-569
5
0.92
2XC1
B
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-160, 161-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
2XC1
C
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-161, 162-184, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
6EU4
C
A0A218KRF6
Acinetobacter phage vB_AbaP_AS12
215-236, 237-259, 267-290
3
0.92
6F7K
D
A0A0C5PVE3
Salmonella phage Det7
316-337, 428-450, 487-509, 513-536, 545-568
5
0.92
3RIQ
A
G8GV21
Salmonella phage 9NA
160-180, 181-202, 282-303, 304-325, 332-354, 360-382, 392-414, 437-459
8
0.92
1TYX
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-161, 162-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
1TYW
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-161, 162-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 463-487
9
0.92
1TYV
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-160, 161-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
1TYU
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-161, 162-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
1TSP
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-161, 162-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
4OZY
A
Q887Q3
Mannuronan C5-epimerase {ECO:0000305}
Pseudomonas syringae pv
276-298, 299-320, 323-345, 346-369, 371-393, 394-416, 417-439, 457-479
8
0.92
1QRB
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-161, 162-184, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
1QQ1
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-161, 162-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
3TH0
A
P12528
Tail spike protein {ECO:0000305}
Salmonella phage P22 (Bacteriophage P22)
140-160, 161-183, 266-287, 288-310, 316-338, 344-366, 376-398, 423-446, 447-468
9
0.92
4FD0
A
A5ZLA0
Bacteroides caccae ATCC 43185
144-165, 166-190, 191-213, 234-256, 257-278, 279-301, 330-352
7
0.91
4RMX
A
-
-
-
277-300, 352-368, 371-394, 396-418, 443-464
5
0.91
4PEU
A
A3DHD2
Carbohydrate-binding domain-containing protein Cthe_2159 {ECO:0000303|PubMed:25286843, ECO:0000312|EMBL:ABN53361.1}
Hungateiclostridium thermocellum (strain ATCC 27405 / DSM 1237 / JCM 9
91-114, 154-177, 178-199, 200-221
4
0.91
4CP6
A
A0A0H2USF9
Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
122-143, 144-166, 167-188, 191-213, 216-238, 275-297, 298-320, 321-341, 344-366, 367-389
10
0.91
2IQ7
F
A1E266
Colletotrichum lupini var
72-93, 138-154, 185-206, 207-228, 235-257, 265-287
6
0.91
1RU4
A
P0C1A7
Pectate lyase L
Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937))
70-91, 139-161, 162-183, 218-240, 280-302, 304-326, 329-349
7
0.91
4OZZ
A
Q887Q3
Mannuronan C5-epimerase {ECO:0000305}
Pseudomonas syringae pv
173-193, 276-298, 299-320, 323-345, 347-369, 371-393, 394-416, 417-439, 457-479
9
0.91
2V70
B
O94813
Slit homolog 2 protein C-product
Homo sapiens (Human)
525-546, 550-571, 574-596, 597-619, 620-642, 644-666
6
0.91
2VBE
A
Q9XJP3
Tail spike protein {ECO:0000305}
Shigella phage Sf6 (Shigella flexneri bacteriophage VI) (Bacteriophage
249-271, 280-302, 303-325, 365-387, 388-410, 474-496
6
0.91
5MQP
G
Q8A915
Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 1058
63-86, 385-403, 404-424, 444-463, 472-494, 502-523
6
0.90
2PYH
B
Q44493
Mannuronan C5-epimerase AlgE4 {ECO:0000305}
Azotobacter vinelandii
33-51, 133-155, 157-179, 180-202, 204-226, 234-251, 252-274, 275-299, 320-342, 347-369
10
0.90
4FDW
A
A7LUR6
Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 1115
144-168, 169-190, 191-213, 214-233, 234-256, 257-278, 279-300, 330-352, 353-375
9
0.90
2IQ7
G
A1E266
Colletotrichum lupini var
72-93, 138-154, 185-206, 207-228, 235-257, 265-287
6
0.90
4PHB
A
A3DHD2
Carbohydrate-binding domain-containing protein Cthe_2159 {ECO:0000303|PubMed:25286843, ECO:0000312|EMBL:ABN53361.1}
Hungateiclostridium thermocellum (strain ATCC 27405 / DSM 1237 / JCM 9
91-114, 155-177, 178-199, 200-221, 228-250, 251-272
6
0.90
5M60
A
G0S3N2
Chaetomium thermophilum (strain DSM 1495 / CBS 144
96-118, 218-240, 241-261, 262-283, 290-312, 320-342, 454-475, 573-595
8
0.90
2IQ7
C
A1E266
Colletotrichum lupini var
72-93, 138-154, 185-206, 207-228, 235-257, 265-287
6
0.90
5G5N
C
A9CB85
Hexon-interlacing protein LH3
Snake adenovirus serotype 1 (SnAdV-1)
44-66, 129-151, 161-183, 184-206, 207-227, 281-303, 330-353
7
0.90
2IQ7
B
A1E266
Colletotrichum lupini var
138-154, 185-206, 207-228, 235-257, 265-287
5
0.90
5M5Z
A
G0S3N2
Chaetomium thermophilum (strain DSM 1495 / CBS 144
96-118, 218-240, 241-261, 262-283, 290-312, 320-342, 454-475, 573-595
8
0.90
4NK6
A
Q887Q3
Mannuronan C5-epimerase {ECO:0000305}
Pseudomonas syringae pv
172-194, 276-298, 299-321, 346-370, 371-393, 394-416, 417-439, 455-474
8
0.89
5GQF
A
A0A024QYS6
Bifidobacterium longum subsp
223-245, 276-300, 324-346, 347-368, 388-409, 420-442, 443-462
7
0.89
1CZF
B
P26214
Endopolygalacturonase II
Aspergillus niger (strain ATCC 1015 / CBS 113
76-97, 136-156, 187-208, 209-230, 237-259, 265-289
6
0.89
2IQ7
A
A1E266
Colletotrichum lupini var
72-93, 185-206, 207-228, 235-257, 265-287
5
0.89
3JUR
D
Q9WYR8
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
199-221, 222-245, 246-267, 280-303, 308-330, 337-360, 372-395, 400-431
8
0.89
2PYG
B
Q44493
Mannuronan C5-epimerase AlgE4 {ECO:0000305}
Azotobacter vinelandii
33-51, 133-155, 157-179, 180-202, 204-226, 234-251, 252-274, 275-299, 320-337, 347-369
10
0.89
5LW3
A
Q9ZFH0
Mannuronan C5-epimerase AlgE6 {ECO:0000305}
Azotobacter vinelandii
33-51, 132-155, 156-179, 180-202, 204-226, 234-256, 257-279, 280-299, 320-337, 347-369
10
0.89