1. To get the list of base pairs which are protonated
2. To get the list of base pairs which show amino acceptor interactions
3. To get the list of base pairs, involving water molecule (water mediated optimized geometry)
4. To get the list of base-pairs which are not observed in nature but considered for geometry optimization by modelling the structure
4. To get the list of base-pairs where contrained have been usede during optimization
RNABP COGEST version 1.0 © CCNSB, IIIT Hyderabad 2014
