NAPS

Network Parameters

EXAMPLE

Analysis Type :

Network Type :

Weight:

Low threshold:

High threshold:

MD Parameters

Start timestep:

End timestep:

Stride:

PDB File:

Trajectory File(DCD) :

PDB : or

File :

Complex Type :

No. of Chains :

Chain:

Chain 2:

Chain 3:

Chain 4:

Network Type :

Force Field Type :

Weight :

Lower threshold (Å) :

Upper threshold (Å) :

Residue separation:

Related publications:
1) Chakrabarty B and Parekh N, NAPS: Network Analysis of Protein Structures, Nucleic Acids Res., 44(W1), W375-82, (2016)
2) Chakrabarty B, Naganathan V, Garg K, Agarwal Y and Parekh N, NAPS update: network analysis of molecular dynamics data and protein–nucleic acid complexes, Nucleic Acids Res. 47(W1), W462–70, (2019)