An Integrated Pipeline for Sequence Variant Identification and Annotation in Next Generation Sequencing Data

A fast and efficient tool for detecting SNPs and Indels in single, paired (case-control) and multiple samples. SeqVItA offers detection of Somatic mutations, rare and common variants across population samples.

Source Code

Github Link to download the source code is available here.


User manual on how to use the SeqVItA is available here.


Set of annotation files required for annotation of variants is available here.

Sample Test Files

Sample files to test SeqVItA. Download here.

Contact: Prashanthi Dharanipragada, Sampreeth Reddy and Dr. Nita Parekh,
Centre for Computational Natural Sciences and Bioinformatics,
International Institute of Information Technology-Hyderabad, India